PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1231_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 308aa    MW: 33855.9 Da    PI: 8.389
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1231_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-19119169256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  RrC1231_p4 119 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 169
                 59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.83E-17118178No hitNo description
PROSITE profilePS5103223.301119176IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22119176IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-31119177IPR001471AP2/ERF domain
SMARTSM003801.1E-36119182IPR001471AP2/ERF domain
PfamPF008473.0E-13120169IPR001471AP2/ERF domain
PRINTSPR003673.8E-10120131IPR001471AP2/ERF domain
PRINTSPR003673.8E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEESNDVFQT KFSPKISEIR ASLSQIILAG GPNTLDSVFS FLATSSATTS SLDTLNPPPP  60
QLGSSVYLHQ RDLIERLHLQ NRAISTPPPL FSTSFDHQSS PSAAFAAALG RTTAKRKKLY  120
RGVRQRHWGK WVAEIRLPQN RMRVWLGTYD TAEAAAYAYD RAAYKLRGEY ARLNFPNLKD  180
PSELLGLGDS SKLIALKNAV DGKIQSICQR VRRERAKKSG KGSKDSSSTA TTGDSSYSSS  240
SEILSSPAVT VTATVVNSED SYWNSEKSFA LTTGEEEEDT MMGVDTDGFL LARMPSFDPE  300
LIWEVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19118176160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0666891e-116AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence.
GenBankAK2287631e-116AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15.
GenBankAY5608761e-116AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds.
GenBankBT0330821e-116BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds.
GenBankCP0026841e-116CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112883.11e-155PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-142ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLM4EFY41e-155M4EFY4_BRARP; Uncharacterized protein
STRINGBra027697.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-110ERF family protein